Class CheckFormat

java.lang.Object
  CheckFormat

public class CheckFormat
extends java.lang.Object

This program reads in LINKAGE paramter and pedigree files, checks that they are readable and then outputs the checked files. Error and warning messages are printed to the screen. The checks made by this program are made whenever data is input.

See my LINKAGE format page for information about the way this suite of programs uses this format, including the difference between "pre-makeped" and standard "post-makeped" formats.

Usage : java CheckFormat input.par input.ped [output.par] [output.ped] [-pre]

where

• input.par is the input LINKAGE paramter file.
• input.ped is the input LINKAGE pedigree file.
• output.par is the checked output LINKAGE parameter file. The default is to write to standard output.
• output.ped is the checked output LINKAGE pedigree file. The default is to write to standard output.
• -pre If this option is specified the data is assumed to be in so called "pre-makeped" format and interpreted appropritately. The output will be in regular format not "pre-makeped" format.

Constructor Summary

CheckFormat()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CheckFormat

public CheckFormat()

Method Detail

main

public static void main(java.lang.String[] args)