Class DownCodeAlleles

java.lang.Object
  DownCodeAlleles

public class DownCodeAlleles
extends java.lang.Object

This program reduces the number of alleles in the models for the given genetic loci to include only alleles that appear in the pedigree file plus one catchall unseen alleles that has the total frequency of the original unseen alleles.

Usage : java DownCodeAlleles input.par input.ped [output.par] [output.ped]

where

• input.par is the original LINKAGE parameter file
• input.ped is the original LINKAGE pedigree file
• output.par is the file where the new down coded parameters will be put. The default is to write to standard output.
• output.ped is the file where the new down coded pedigree data will be put. The default is to write to standard output.

Constructor Summary

DownCodeAlleles()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DownCodeAlleles

public DownCodeAlleles()

Method Detail

main

public static void main(java.lang.String[] args)