Class HaploFreqs

java.lang.Object
  HaploFreqs

public class HaploFreqs
extends java.lang.Object

This program find all the haplotypes with frequency above a specified threshold for a graphical model for linkage disequilibrium.

Usage : java HaploFreqs < model.file [threshold]

where

• model.file is file containing a graphical model for linkage disequilibrium as output by HapGraph for example.
• threshold is the minimum frequency required for a haplotype to be output. The default value is 0.

A list of haplotypes and their frequencies are written to the standard output file. The total number of haplotypes written and their cumulative frequency are written to the screen.

Constructor Summary

HaploFreqs()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HaploFreqs

public HaploFreqs()

Method Detail

main

public static void main(java.lang.String[] args)