Class HetLods

java.lang.Object
  alun.util.Main
      HetLods

public class HetLods
extends Main

This program calculates two point hetlod scores on a grid of points.

The values of theta used are {0.0, 0.01, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.99, 1.0}.

The values of alpha used are {0.0, 0.01, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.99, 1.0}.

The output is a matrix of hetlods for each marker. Theta varies across the columns and alpha varies down the rows of each matrix. Each matrix is separated by a blank line.

Usage : java HetLods input.par input.ped

where

• input.par is a LINKAGE parameter file
• input.ped is a LINKAGE pedigree file

Constructor Summary

HetLods()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class alun.util.Main

strip

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HetLods

public HetLods()

Method Detail

main

public static void main(java.lang.String[] args)