Class ObligateErrors

java.lang.Object
  alun.genepi.ObligatoryErrors
      ObligateErrors

public class ObligateErrors
extends ObligatoryErrors

This program checks genotype data on pedigrees and indicates whether the data at any particular locus is inconsistent with Mendelian inheritance.

Usage : java ObligateErrros input.par input.ped

where

• input.par is a LINKAGE parameter file
• input.ped is a LINKAGE pedigree file

The program works through each pedigree and locus in turn and writes a list of errors to the standard output file.

A more complete analysis which finds the posterior error probabilities for each genotype call, and hence makes finding the source of error easier, is done by CheckErrors .

Constructor Summary

ObligateErrors()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class alun.genepi.ObligatoryErrors

obligatoryError

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ObligateErrors

public ObligateErrors()

Method Detail

main

public static void main(java.lang.String[] args)