alun.gchap
Class ApproxGCHap

java.lang.Object
  alun.gchap.ApproxGCHap

Direct Known Subclasses:

ApproxGCHap

public class ApproxGCHap
extends java.lang.Object

This class contains a main method for running the approximate equivalent of GCHap. In this version as each locus is added gene counting is run to convergence and haplotypes with frequency estimate at or below a certain threshold are removed. The default threshold is 0. To change this add a value as the third argument on the command line following the linkage .par and .ped files.

Constructor Summary

ApproxGCHap()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ApproxGCHap

public ApproxGCHap()

Method Detail

main

public static void main(java.lang.String[] args)