alun.gchap
Class Marker

java.lang.Object
  alun.gchap.GeneticTrait
      alun.gchap.Marker

Direct Known Subclasses:

SNP

public class Marker
extends GeneticTrait

This class extends GeneticTrait to represent a single marker.

Constructor Summary

Marker(int n)
Creates a new genetic trait with an underlying locus that has the given number of alleles.

Method Summary

void	addObservations(int i, int j, int k) Adds a count for the given observation to the trait.
Phenotype	findPhenotype(int i, int j) Returns the phenotype for the given pair of alleles.
static void	main(java.lang.String[] args) Test main.

Methods inherited from class alun.gchap.GeneticTrait

downCode, downCode, geneCount, getLocus, nPhenotypes, parsDownCode, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Marker

public Marker(int n)

Creates a new genetic trait with an underlying locus that has the given number of alleles. Phenotypes are derived assuming codominance.

Method Detail

findPhenotype

public Phenotype findPhenotype(int i,
                               int j)

Returns the phenotype for the given pair of alleles.

addObservations

public void addObservations(int i,
                            int j,
                            int k)

Adds a count for the given observation to the trait.

main

public static void main(java.lang.String[] args)

Test main.