|
Class Summary |
| ApproxGCHap |
This class contains a main method for running the approximate
equivalent of GCHap. |
| GCHap |
This class just has a main method in it to run the
gene counting program. |
| GeneticTrait |
A genetic trait links together a locus with phenotypes. |
| Genotype |
Represents a genotype as an un ordered pair of allele indexes. |
| HapFormatter |
A class for formatting output. |
| Locus |
This classes represents a genetic locus. |
| Marker |
This class extends GeneticTrait to represent a single marker. |
| MarkerObservation |
Represents an observation for a marker locus. |
| MarkerPhenotype |
Represents a phenotype at a marker. |
| MultiLocus |
This classes extends locus to represent a combination of loci. |
| MultiLocusObservation |
This class represents an observation at a list of loci. |
| MultiLocusPhenotype |
This class represents a multi locus phenotype, or
list of phase unknown genotypes. |
| MultiLocusTrait |
This represents a multi locus trait. |
| Observation |
A base class from which all observation, single or multi-locus are
derived. |
| Phenotype |
Base class from which single and multi locus phenotypes are
derived. |
| SNP |
This class represent a single nucleotide polymorphism. |