alun.genepi
Class ExtendedLMSampler

java.lang.Object
  alun.genepi.LinkageSampler
      alun.genepi.IndependentLocusSampler
          alun.genepi.LinkedLocusSampler
              alun.genepi.LocusMeiosisSampler
                  alun.genepi.ExtendedLMSampler

public class ExtendedLMSampler
extends LocusMeiosisSampler

Constructor Summary

ExtendedLMSampler(LinkageVariables l)

ExtendedLMSampler(LinkageVariables l, int[] updates)

ExtendedLMSampler(LinkageVariables l, int[] updates, int level)

ExtendedLMSampler(LinkageVariables l, int[] updates, int level, int fst)

Method Summary

void	sample()
void	sampleMeioses(int nind)

Methods inherited from class alun.genepi.LocusMeiosisSampler

setMFreq

Methods inherited from class alun.genepi.LinkedLocusSampler

linkedLocusBlocks

Methods inherited from class alun.genepi.IndependentLocusSampler

independentLocusBlocks

Methods inherited from class alun.genepi.LinkageSampler

getInitialBlocks, getLocusBlocks, getMeiosisBlocks, getThrifty, initialize, sample, setInitialBlocks, setLocusBlocks, setMeiosisBlocks, setThrifty

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExtendedLMSampler

public ExtendedLMSampler(LinkageVariables l)

ExtendedLMSampler

public ExtendedLMSampler(LinkageVariables l,
                         int[] updates)

ExtendedLMSampler

public ExtendedLMSampler(LinkageVariables l,
                         int[] updates,
                         int level)

ExtendedLMSampler

public ExtendedLMSampler(LinkageVariables l,
                         int[] updates,
                         int level,
                         int fst)

Method Detail

sample

public void sample()

Overrides:

sample in class LocusMeiosisSampler

sampleMeioses

public void sampleMeioses(int nind)