alun.genepi
Class Genotype

java.lang.Object
  alun.markov.BasicVariable
      alun.genepi.GeneticVariable
          alun.genepi.Genotype

All Implemented Interfaces:

Iterable, Variable

Direct Known Subclasses:

UnorderedGenotype

public class Genotype
extends GeneticVariable

A variable representing the ordered genotype for an individual as some genetic locus.

Constructor Summary

Genotype(int n)

Method Summary

int	getId()
int	mat() Return the state of the maternal allele for this genotype.
int	pat() Returns the state of the paternal allele for this genotype.
void	setId(int n)
boolean	setState(int i, int j) Sets the state of the genotype to match the given states for the paternal and maternal alleles.

Methods inherited from class alun.genepi.GeneticVariable

restore, save

Methods inherited from class alun.markov.BasicVariable

getName, getNStates, getState, getStates, init, main, next, setName, setState, setStates, setStates, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Genotype

public Genotype(int n)

Method Detail

pat

public int pat()

Returns the state of the paternal allele for this genotype.

mat

public int mat()

Return the state of the maternal allele for this genotype.

setState

public boolean setState(int i,
                        int j)

Sets the state of the genotype to match the given states for the paternal and maternal alleles.

setId

public void setId(int n)

getId

public int getId()