alun.genepi
Class GenotypeModel

java.lang.Object
  alun.markov.GraphicalModel
      alun.genepi.GenotypeModel

public class GenotypeModel
extends GraphicalModel

Constructor Summary

GenotypeModel()

GenotypeModel(Product p)

GenotypeModel(Product p, java.util.Collection<Variable> keep)

GenotypeModel(Product p, Variable keep)

Method Summary

java.util.Set<Variable>	getTripletClique(java.util.Set<Variable> v, Product p)
Clique	makeClique(java.util.Set<Variable> v, Clique next, Product p)
GraphicalModel	makeGraphicalModel(Product p)

Methods inherited from class alun.markov.GraphicalModel

allocateInvolTables, allocateOutputTables, allocLogPeel, clearInvolTables, clearOutputTables, cliqueConditionals, cliqueConditionals, collect, distribute, drop, findMarginals, getConditional, getFinal, getFinals, getMarginal, getMarginal, getMarginal, getMax, log10Peel, logPeel, max, maxComplexity, meanGetFinals, nCuts, nInvols, peel, reduceStates, sizeCuts, sizeInvols, store, time, toString, totalComplexity

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GenotypeModel

public GenotypeModel(Product p)

GenotypeModel

public GenotypeModel(Product p,
                     java.util.Collection<Variable> keep)

GenotypeModel

public GenotypeModel(Product p,
                     Variable keep)

GenotypeModel

public GenotypeModel()

Method Detail

makeGraphicalModel

public GraphicalModel makeGraphicalModel(Product p)

Overrides:

makeGraphicalModel in class GraphicalModel

makeClique

public Clique makeClique(java.util.Set<Variable> v,
                         Clique next,
                         Product p)

Overrides:

makeClique in class GraphicalModel

getTripletClique

public java.util.Set<Variable> getTripletClique(java.util.Set<Variable> v,
                                                Product p)