alun.genepi
Class IndependentLocusSampler

java.lang.Object
  alun.genepi.LinkageSampler
      alun.genepi.IndependentLocusSampler

Direct Known Subclasses:

LDSampler, LinkedLocusSampler

public class IndependentLocusSampler
extends LinkageSampler

Constructor Summary

IndependentLocusSampler()

IndependentLocusSampler(LociVariables lv)

IndependentLocusSampler(LociVariables lv, int first)

Method Summary

java.util.Set<GraphicalModel>

independentLocusBlocks(LociVariables lv, int first)

Methods inherited from class alun.genepi.LinkageSampler

getInitialBlocks, getLocusBlocks, getMeiosisBlocks, getThrifty, initialize, sample, sample, setInitialBlocks, setLocusBlocks, setMeiosisBlocks, setThrifty

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IndependentLocusSampler

public IndependentLocusSampler()

IndependentLocusSampler

public IndependentLocusSampler(LociVariables lv)

IndependentLocusSampler

public IndependentLocusSampler(LociVariables lv,
                               int first)

Method Detail

independentLocusBlocks

public java.util.Set<GraphicalModel> independentLocusBlocks(LociVariables lv,
                                                            int first)