alun.genepi
Class LinkedLocusSampler

java.lang.Object
  alun.genepi.LinkageSampler
      alun.genepi.IndependentLocusSampler
          alun.genepi.LinkedLocusSampler

Direct Known Subclasses:

LocusMeiosisSampler

public class LinkedLocusSampler
extends IndependentLocusSampler

Constructor Summary

LinkedLocusSampler()

LinkedLocusSampler(LinkageVariables vars)

LinkedLocusSampler(LinkageVariables vars, int first)

Method Summary

java.util.Set<GraphicalModel>

linkedLocusBlocks(LinkageVariables vars, int first)

Methods inherited from class alun.genepi.IndependentLocusSampler

independentLocusBlocks

Methods inherited from class alun.genepi.LinkageSampler

getInitialBlocks, getLocusBlocks, getMeiosisBlocks, getThrifty, initialize, sample, sample, setInitialBlocks, setLocusBlocks, setMeiosisBlocks, setThrifty

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LinkedLocusSampler

public LinkedLocusSampler()

LinkedLocusSampler

public LinkedLocusSampler(LinkageVariables vars)

LinkedLocusSampler

public LinkedLocusSampler(LinkageVariables vars,
                          int first)

Method Detail

linkedLocusBlocks

public java.util.Set<GraphicalModel> linkedLocusBlocks(LinkageVariables vars,
                                                       int first)