alun.genepi
Class LociVariables

java.lang.Object
  alun.genepi.LociVariables

Direct Known Subclasses:

LinkageVariables

public class LociVariables
extends java.lang.Object

Constructor Summary

LociVariables(GeneticDataSource data)

LociVariables(GeneticDataSource data, double errorpri)

Method Summary

Genotype	fathersGenotype(int i, int j)
GeneticDataSource	getDataSource()
Error	getError(int i, int j)
Genotype	getGenotype(int i, int j)
Inheritance	getInheritance(int i, int j, int k)
LocusVariables[]	getLocusVariables()
boolean	isFounder(int i)
Product	locusProduct(int i)
Genotype	mothersGenotype(int i, int j)
int	nAlleles(int j)
int	nFamilies()
int	nFounders()
int	nIndividuals()
int	nLoci()
Product	traitProduct(Theta theta)
Product	twoPointProduct(int a, int b, Theta t)
Product	twoPointProduct(int a, int b, Theta mrec, Theta frec)
Product	unrelatedLocusProduct(int i)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LociVariables

public LociVariables(GeneticDataSource data,
                     double errorpri)

LociVariables

public LociVariables(GeneticDataSource data)

Method Detail

locusProduct

public Product locusProduct(int i)

unrelatedLocusProduct

public Product unrelatedLocusProduct(int i)

twoPointProduct

public Product twoPointProduct(int a,
                               int b,
                               Theta mrec,
                               Theta frec)

twoPointProduct

public Product twoPointProduct(int a,
                               int b,
                               Theta t)

getLocusVariables

public LocusVariables[] getLocusVariables()

getInheritance

public Inheritance getInheritance(int i,
                                  int j,
                                  int k)

getError

public Error getError(int i,
                      int j)

fathersGenotype

public Genotype fathersGenotype(int i,
                                int j)

mothersGenotype

public Genotype mothersGenotype(int i,
                                int j)

getGenotype

public Genotype getGenotype(int i,
                            int j)

isFounder

public boolean isFounder(int i)

nLoci

public int nLoci()

nAlleles

public int nAlleles(int j)

nIndividuals

public int nIndividuals()

nFounders

public int nFounders()

nFamilies

public int nFamilies()

traitProduct

public Product traitProduct(Theta theta)

getDataSource

public GeneticDataSource getDataSource()