Package alun.genepi

Class Summary
Allele  
AlleleErrorPenetrance  
AuxiliaryFunction  
AuxiliaryModel  
AuxiliaryVariable  
AuxLinkFunction  
AuxLocusFunction  
AuxOneGenHalvesVariable  
AuxOneGenVariable  
AuxThreeGenVariable  
Error  
ErrorPenetrance  
ErrorPrior  
ExtendedLMSampler  
FixedRecombination  
GeneticFunction  
GeneticVariable  
Genotype A variable representing the ordered genotype for an individual as some genetic locus.
GenotypeModel  
GenotypeOnlyDropSampler  
GenotypePrior A function that returns the prior probability of the genotype as the product of the priors for the paternal and maternal alleles.
IndependentLocusSampler  
Inheritance  
LinkageSampler  
LinkageVariables  
LinkedLocusSampler  
LociVariables  
LocusMeiosisSampler  
LocusVariables  
MaternalInheritance  
MaxLoder  
MendelianTransmission  
OneTheta  
PaternalInheritance  
Penetrance  
Recombination  
Theta  
Tlods  
TripletClique  
TrivialFunction  
UnconditionalMeiosisSampler  
UnorderedGenotype  
UnorderedPrior  
UnorderedTransmission  
VariableRecombination