alun.genio
Class AffectionStatusPhenotype

java.lang.Object
  alun.genio.LinkagePhenotype
      alun.genio.AffectionStatusPhenotype

public class AffectionStatusPhenotype
extends LinkagePhenotype

This represents the data for an individual at a locus specified in the linkage affected status format.

Field Summary

static int	AFFECTED
int	liability
int	nliab
int	status
static int	UNAFFECTED
static int	UNKNOWN

Constructor Summary

AffectionStatusPhenotype(AffectionStatusLocus l, int stat, int liab)
Creates a new phenotype from the given status and liability class numbers.

Method Summary

LinkagePhenotype	nullCopy()
java.lang.String	toString() Returns a string representation of the data.

Methods inherited from class alun.genio.LinkagePhenotype

getLocus, setLocus

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

UNKNOWN

public static final int UNKNOWN

See Also:

Constant Field Values

AFFECTED

public static final int AFFECTED

See Also:

Constant Field Values

UNAFFECTED

public static final int UNAFFECTED

See Also:

Constant Field Values

status

public int status

liability

public int liability

nliab

public int nliab

Constructor Detail

AffectionStatusPhenotype

public AffectionStatusPhenotype(AffectionStatusLocus l,
                                int stat,
                                int liab)

Creates a new phenotype from the given status and liability class numbers. The data is checked for consistency with the data for the specified locus.

Method Detail

nullCopy

public LinkagePhenotype nullCopy()

Specified by:

nullCopy in class LinkagePhenotype

toString

public java.lang.String toString()

Returns a string representation of the data.

Overrides:

toString in class java.lang.Object