alun.linkage
Class NumberedAllelePhenotype

java.lang.Object
  alun.linkage.LinkagePhenotype
      alun.linkage.NumberedAllelePhenotype

public class NumberedAllelePhenotype
extends LinkagePhenotype

This class represents the data for an individual for a locus in the linkage numbered allele input format.

Field Summary

int	a1 The first allele at this locus for the individual whose data this is.
int	a2 The second allele at this locus for the individual whose data this is.

Constructor Summary

NumberedAllelePhenotype(NumberedAlleleLocus l, int allele1, int allele2)
Creates a new phenotype given the specified allele numbers and checks that the data is consistent with the parameters for the given locus.

Method Summary

LinkagePhenotype	nullCopy()
void	reCode(int[] c)
java.lang.String	toString() Returns a string giving the numbers of the alleles at this locus for the individual whose data this is.

Methods inherited from class alun.linkage.LinkagePhenotype

getLocus, setLocus

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

a1

public int a1

The first allele at this locus for the individual whose data this is.

a2

public int a2

The second allele at this locus for the individual whose data this is.

Constructor Detail

NumberedAllelePhenotype

public NumberedAllelePhenotype(NumberedAlleleLocus l,
                               int allele1,
                               int allele2)

Creates a new phenotype given the specified allele numbers and checks that the data is consistent with the parameters for the given locus.

Method Detail

nullCopy

public LinkagePhenotype nullCopy()

Specified by:

nullCopy in class LinkagePhenotype

toString

public java.lang.String toString()

Returns a string giving the numbers of the alleles at this locus for the individual whose data this is.

Overrides:

toString in class java.lang.Object

reCode

public void reCode(int[] c)