Package alun.linkage

Interface Summary
LinkConstants  
 

Class Summary
AffectionStatusLocus This class represents a locus as specified in the linkage affectation status format.
AffectionStatusPhenotype This represents the data for an individual at a locus specified in the linkage affected status format.
LinkageDataSet This class holds the information from a standard Linkage parameter data file and a standard Linkage pedigree file.
LinkageFormatter  
LinkageIndividual A class that contains the information for an individual from the linkage .ped file.
LinkageInterface  
LinkageLocus This is the base class from which the linkage locus types are derived.
LinkageParameterData This structure hold the information associated with the data from a linkage parameter file.
LinkagePedigreeData A structure representing the data from a linkage .ped file.
LinkagePhenotype This is a base class from with the linkage phenotype classes are derived.
NumberedAlleleLocus This class represents the a locus given in the linkage numbered locus format.
NumberedAllelePhenotype This class represents the data for an individual for a locus in the linkage numbered allele input format.
QuantitativeLocus  
QuantitativePhenotype  
 

Exception Summary
LinkageException A run time exception thrown by objects in the linkage package.