alun.mcld
Class DecomposableSearch

java.lang.Object
  alun.mcld.DecomposableSearch

All Implemented Interfaces:

GraphMHScheme

public class DecomposableSearch
extends java.lang.Object
implements GraphMHScheme

Field Summary

int

nups

Constructor Summary

DecomposableSearch(java.util.Collection<Locus> l)

DecomposableSearch(java.util.Collection<Locus> l, double o0, double o1)

Method Summary

Graph<Locus,java.lang.Object>	getGraph()
void	initialize()
LogLikelihood	update(JointScheme js, double thresh)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nups

public int nups

Constructor Detail

DecomposableSearch

public DecomposableSearch(java.util.Collection<Locus> l)

DecomposableSearch

public DecomposableSearch(java.util.Collection<Locus> l,
                          double o0,
                          double o1)

Method Detail

getGraph

public Graph<Locus,java.lang.Object> getGraph()

Specified by:

getGraph in interface GraphMHScheme

initialize

public void initialize()

Specified by:

initialize in interface GraphMHScheme

update

public LogLikelihood update(JointScheme js,
                            double thresh)

Specified by:

update in interface GraphMHScheme