alun.mcld
Class Diplotypes

java.lang.Object
  alun.mcld.PerfectHaplotypes
      alun.mcld.ImperfectHaplotypes
          alun.mcld.Diplotypes

All Implemented Interfaces:

DataHaplotypeSource, HaplotypeSource

public class Diplotypes
extends ImperfectHaplotypes

Constructor Summary

Diplotypes(BasicGeneticData dat, double errprob)

Diplotypes(BasicGeneticData dat, double errprob, int frst)

Method Summary

boolean	maximize(LDModel m)
boolean	update(LDModel m)
boolean	update(LDModel model, boolean sample)

Methods inherited from class alun.mcld.PerfectHaplotypes

getAllele, getHaplotype, getLoci, main, nAlleles, nHaplotypes, nLoci, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Diplotypes

public Diplotypes(BasicGeneticData dat,
                  double errprob)
           throws java.io.IOException

Throws:

java.io.IOException

Diplotypes

public Diplotypes(BasicGeneticData dat,
                  double errprob,
                  int frst)
           throws java.io.IOException

Throws:

java.io.IOException

Method Detail

update

public boolean update(LDModel m)

Specified by:

update in interface HaplotypeSource

Overrides:

update in class PerfectHaplotypes

maximize

public boolean maximize(LDModel m)

Specified by:

maximize in interface HaplotypeSource

Overrides:

maximize in class PerfectHaplotypes

update

public boolean update(LDModel model,
                      boolean sample)