alun.mcld
Class Haplotypes

java.lang.Object
  alun.mcld.PerfectHaplotypes
      alun.mcld.ImperfectHaplotypes
          alun.mcld.Haplotypes

All Implemented Interfaces:

DataHaplotypeSource, HaplotypeSource

public class Haplotypes
extends ImperfectHaplotypes

Constructor Summary

Haplotypes(InputFormatter f, double errprob)

Method Summary

static void	main(java.lang.String[] args)
boolean	maximize(LDModel m)
boolean	startup(boolean sample)
java.lang.String	toString()
boolean	update(LDModel m)
boolean	update(LDModel m, boolean sample)

Methods inherited from class alun.mcld.PerfectHaplotypes

getAllele, getHaplotype, getLoci, nAlleles, nHaplotypes, nLoci

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Haplotypes

public Haplotypes(InputFormatter f,
                  double errprob)
           throws java.io.IOException

Throws:

java.io.IOException

Method Detail

update

public boolean update(LDModel m)

Specified by:

update in interface HaplotypeSource

Overrides:

update in class PerfectHaplotypes

maximize

public boolean maximize(LDModel m)

Specified by:

maximize in interface HaplotypeSource

Overrides:

maximize in class PerfectHaplotypes

update

public boolean update(LDModel m,
                      boolean sample)

startup

public boolean startup(boolean sample)

toString

public java.lang.String toString()

Overrides:

toString in class PerfectHaplotypes

main

public static void main(java.lang.String[] args)